Instructions for Transferring Data from Globus to the MSU HPCC

These step-by-step instructions are designed to help users new to Linux and High-Performance Computing (HPC) transfer data from Globus to the Michigan State University High-Performance Computing Center (MSU HPCC).

Prerequisites

Step-by-Step Guide

  1. Access Globus Online

    Globus Homepage

  2. Log In with Your MSU Credentials
    • On the Globus login page, find the section titled “Use your existing organizational login”.
    • Click in the search bar under this section and type “Michigan State University”.
    • Select “Michigan State University” from the dropdown list.
    • Click the “Continue” button.

    Select MSU Organizational Login

  3. Authenticate with MSU
    • You will be redirected to the MSU login page.
    • Enter your MSU NetID and password.
    • Click “Login”.
    • After successful login, you’ll be redirected back to the Globus web app.

    MSU Authentication Page

  4. Navigate to the File Manager
    • On the left-hand side menu, click on “File Manager”.

    Globus File Manager

  5. Select the Source Data Collection (Starting Point)
    • In the File Manager, you’ll see two panels side by side. The left panel is the source (where you’re transferring data from).
    • In the source panel, click on the empty search bar next to “Collection”.
    • Type the name of the data collection you wish to transfer from.
      • Note: If you are receiving data from a genomics core or collaborator, click on the “Shared With You” tab to find your collection.
    • Select the appropriate collection from the search results.

    Select Source Collection

  6. Locate and Select Your Data
    • Once the collection loads, navigate through the folders to find your data.
    • Click to select the files or folders you want to transfer.
      • You can select multiple items by holding down the Ctrl key (Windows) or Command key (Mac) while clicking.

    Select Files to Transfer

  7. Set Up the Destination Endpoint (MSU HPCC)
    • Above the source panel, click on “Transfer or Sync to…“ to open the destination panel on the right.
    • In the destination panel, click on the empty search bar next to “Collection”.
    • Type “msuhpcc”.
    • Select “Michigan State University MSU ICER” from the list.

    Select Destination Endpoint

  8. Authenticate the MSU HPCC Endpoint (If Prompted)
    • You may be prompted to authenticate the MSU HPCC endpoint.
    • Click “Continue” or “Authenticate” as prompted.
    • Follow any additional on-screen instructions to complete authentication.

    Authenticate MSU HPCC Endpoint

  9. Specify the Destination Path on the HPCC
    • In the destination panel, locate the “Path” field.
    • Enter the path where you want to store your data on the HPCC.
      • For example: /mnt/scratch/$yourUsername
      • Replace $yourUsername with your actual HPCC username.
    • Press Enter or click the arrow button to navigate to this directory.
      • Note: If the directory doesn’t exist, ensure you have the correct path or create the directory using HPCC resources.

    Specify Destination Path

  10. Start the Transfer
    • Review your selections:
      • Ensure the correct files are selected in the source panel.
      • Confirm the destination path is correct.
    • Click the “Start” button to begin the transfer.

    Start Transfer

  11. Monitor the Transfer Progress
    • Click on “Activity” in the left-hand menu to view transfer progress.
    • You can see active, completed, and failed transfers.
    • Globus may send you an email notification when the transfer is complete.

    Monitor Transfer Activity

Additional Information

Understanding Key Terms

Tips for New Users

Getting Help

Summary

By following these steps, you should be able to transfer data from Globus to the MSU HPCC efficiently. If you encounter any issues or have questions, don’t hesitate to reach out to the support resources listed above.

September 23, 2024   John Vusich, Leah Terrian