Data Handling and Storage on the HPCC
Sharing Data on the HPCC with Fellow HPCC Users
Uploading Data to HPCC using Globus
Transferring data from MSU OneDrive to the HPCC using Globus
Uploading Sequencing Data From a Public Database Using nf-core/fetchngs
Transferring Local Files to the MSU HPCC using Globus
Using nf-core Pipelines on the HPCC
Whole Genome Sequencing Pipeline Tutorial
Bulk-RNAseq Pipeline Tutorial
CUT&RUN and CUT&Tag Pipeline Tutorial
ATAC-seq Pipeline Tutorial
ChIP-seq Pipeline Tutorial
Methylation (Bisulfite-Sequencing) Pipeline Tutorial
Single-Cell RNA sequencing Tutorial in R